PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_05ADB552E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 821aa    MW: 93082.7 Da    PI: 8.8426
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_05ADB552E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.85e-2056139390
                   FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                            Y eY++++GF v+k++s++   +g  +++tfvC+k g ++ +      + r+r + +tgCka+++vk +  +++wev  +eleHnH++
  Traes_2AL_05ADB552E.2  56 YLEYGYRAGFGVSKRTSHSV--DGVKYRATFVCYKGGIARIKPGL---KARRRLVAKTGCKAMMVVKYNAsENHWEVVFVELEHNHPC 138
                            99*************99988..9999**************99887...8999*****************99***************97 PP

                   FAR1  90 a 90 
                            +
  Traes_2AL_05ADB552E.2 139 N 139
                            6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-1856139IPR004330FAR1 DNA binding domain
PfamPF105512.1E-23263356IPR018289MULE transposase domain
PfamPF044348.6E-5533576IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.384544580IPR007527Zinc finger, SWIM-type
SMARTSM005750.0064555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MDSLQSDPYT RSSLQMQLID TSTSFETSNL DSVKHEVPTP QVGMTFETVD LAYQSYLEYG  60
YRAGFGVSKR TSHSVDGVKY RATFVCYKGG IARIKPGLKA RRRLVAKTGC KAMMVVKYNA  120
SENHWEVVFV ELEHNHPCNP EMVRFMMCFK DLPDWQREHR PFNAKTRLNP KIHSGRGRPP  180
NQNKDFMVRS FSQSNYSIEA AAKCGKLRFA EGDVEALLVF FDKMQAQNSN FFYNWDMDDE  240
GRLKNVCWVD ARSRAAYQHF SDVVCFDTVY LTYQFVIPLV AFLGINHHGQ FVLLGCGLLG  300
DESPETFSWL FKKWLKCMND KAPEAIITTH SRPVVKAVSE VFLNTRHRYN LWHIMKELPD  360
MSGRVEDKEA ISLRMKKVVY DTITAADFER EWVEMANQYK LHDNRWLTTL FEERAKWVPA  420
YVKDAFWAGI STVRRSERLE AFFDGYITPE TTIKIFIEQF DTAMKLRSDR EAYDDFRSFQ  480
QRPQALSGLL FEEQFANAYT INIFQKFQDQ LKQLMNVTCT EVSRNGSIVT YTVTVIGKER  540
KFDYRVMYNS AEKEVWCICR SLQFKGILCS HALAVLKQEL VMLIPSKYIL DRWRKDYKCP  600
EESKETPIPP ESAKATGKGT KPENVREDKV DNLYNDGHQY FADIVEMGAT DPDAMEYVLS  660
VMKEAKEKVR RFEESRKEKR PEGNPVSSSK KGAKSAKPPS AEDVGNSTSV SAPANTAMAT  720
VAPTMMVAAA SATLAASTPM PVPSCTQMSV PPTMMAMATT SAAVPPGMFL VPMHPHMVFP  780
PFTPGLPAAV PPVAPPPAPT ANAVGVVSNP TKKRKKRKGN S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1811815KKRKK
2811817KKRKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619440.0AK361944.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014751638.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_014751637.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_003579967.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5AP370.0W5AP37_WHEAT; Uncharacterized protein
STRINGMLOC_37569.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-110FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]